Bioorganic chemistry · 2026
Synthesis, antileukemic activity, and predicted ABL kinase binding dynamics of novel oleanolic acid derivatives in BCR::ABL-positive K562 cells.
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Pehlivan Melek, Çerçi Burcu, Karaman Merve, Çınaroğlu Süleyman Selim, Ayna Tülay Kılıçaslan, Aydın Bengüsu, Demir Nefise, Soyöz Mustafa, Öz Tuba, Can Mustafa, Sercan Hakkı Ogün
Аннотация
Chronic myeloid leukemia (CML) is a hematological malignancy driven by the BCR::ABL fusion protein. Although tyrosine kinase inhibitors such as imatinib have markedly improved clinical outcomes, treatment resistance remains a major challenge. Natural product-derived compounds may offer alternative therapeutic opportunities. This study investigated the antiproliferative and pro-apoptotic effects of newly synthesized oleanolic acid (OA) derivatives in K562 cells and evaluated their predicted interactions with the ABL kinase domain. OA derivatives were synthesized and characterized by FT-IR and NMR. Cytotoxicity was assessed using the WST-8 assay. Apoptosis, mitochondrial membrane potential, and cell-cycle distribution were analyzed by flow cytometry. Expression levels of BCL2, BAX, Caspase-3, Caspase-8, and Caspase-9 were determined by qPCR, whereas BCR::ABL protein levels were assessed by Western blotting. Boltz-2 complex prediction, molecular dynamics simulations, and MM/PBSA calculations were used to evaluate predicted binding stability, interaction patterns, and energetics. OA-Acid showed the lowest IC₅₀, whereas OACN showed the highest value . Apoptosis was highest in imatinib- and OACN-treated cells, and mitochondrial membrane potential decreased significantly in both groups. OA-Acid and MCM35 produced the greatest G0/G1 accumulation. Apoptosis-related gene expression was altered in a compound-dependent manner. OA-Acid showed the greatest decrease in BCR::ABL protein level. Computational analyses supported conformationally stable predicted interactions of OA, OA-Acid, and OACN within the ABL ATP-binding region. OA derivatives produced distinct cytotoxic, apoptotic, mitochondrial, cell-cycle, and molecular effects in K562 cells. Computational findings supported predicted interactions within the ABL kinase domain, warranting further chemical and mechanistic evaluation.
Предметные рубрики MeSH
HumansAntineoplastic AgentsOleanolic AcidK562 CellsApoptosisCell ProliferationProtein Kinase InhibitorsMolecular Dynamics SimulationDrug Screening Assays, AntitumorStructure-Activity RelationshipFusion Proteins, bcr-ablDose-Response Relationship, DrugMolecular StructureMembrane Potential, MitochondrialProto-Oncogene Proteins c-abl