Research Code Sharing in Support of Gold Standard Science.
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Klonoff David C, Espinoza Juan, Mader Julia K, Heinemann Lutz, Cobelli Claudio, Kerr David, Kovatchev Boris, Najafi Bijan, Prahalad Priya, Zheng Yaguang, Shao Mandy M, Scheideman Agatha F, DuNova Ashley Y, Kohn Michael, Umpierrez Guillermo E, Wong Tien Y, Abdel Malek Aiman, Agus Michael S D, Ahn David T, AlSaad Rawan, Al-Sofiani Mohammed E, Armstrong David, Arnold Mark A, Bee Yong Mong, Bequette B Wayne, Bellazzi Riccardo, Cengiz Eda, Chase J Geoffrey, Chen Haipeng, Chen Jake Y, Cichosz Simon L, Cinar Ali, Clements Mark A, Close Kelly L, Cuadros Jorge, Contreras Ivan, Datta Gora, Dhatariya Ketan, Doyle Francis J, Drincic Andjela, Facchinetti Andrea, Fleming G Alexander, Foreman Joshua, Gabbay Monica A L, Gutierrez-Osuna Ricardo, Healey Elizabeth, Hoang Thanh D, Jacobs Peter G, Kulzer Bernhard, La Belle Jeff, Lee Aaron Y, Lee Cecilia S, Lee Wei-An, Liepmann Dorian, Maahs David, Mathioudakis Nestoras, Meo Sultan A, Metwally Ahmed A, Misra Shivani, Mohan Viswanathan, Moon Sun-Joon, Raeder Helge, Rhee Connie, Rhee Eun-Jung, Scheinker David, Shah Viral N, Sheng Bin, Snyder Michael P, Sode Koji, Spanakis Elias K, Svensson Jannet, Vaswani Nitin, Vareth Maryam, Vehi Josep, Wallia Amisha, Waki Kayo, Wang Tao, Williams Eric, Wolf Risa M, Wong Jenise C, Yeshiwas Sewagegn, Zilbermint Mihail, Shah Shahid N
Аннотация
Sharing research code in an open access version-controlled repository offers significant benefits for both science as a whole and for individual researchers. In this article, we focus on this practice, which is fully aligned with the NIH's Gold Standard Science (GSS) program as well as FAIR (findable, accessible, interoperable, reusable) and TRUST (transparency, responsibility, user focus, sustainability, technology) principles. Gold Standard Science supports open science by emphasizing transparency, reproducibility, and the use of best practices that enable others to verify and extend research. Pairing a research article's cited data snapshot with a versioned, environment-specific code release, deposited in a companion code repository, ensures that, upon submission to a medical journal, readers and reviewers can directly verify results. An executable and updatable companion code repository complements, rather than replaces, established research data repositories. When code underlying medical research results is made openly available, then other scientists can inspect, run, and validate analyses. These activities enhance reproducibility, which is a core aim of GSS. Shared code also facilitates collaborative innovation by allowing researchers to extend the utility of the code to new datasets and applications. For researchers, code sharing can increase visibility, credibility, and citation impact. Demonstrating transparency through shared executable and updatable code builds trust with journal readers, peer reviewers, funders, and peers. Shared code in an open access repository signals adherence to high standards of scientific integrity and attracts opportunities for collaboration. A researcher who shares code receives recognition as a leader in reproducible, trustworthy research consistent with NIH's GSS principles.