Introduction
Multiple sclerosis (MS) is a chronic immune-mediated disease of the CNS characterized by demyelinating lesions that drive neurodegeneration and progressive neurologic disability. Pathologic studies have demonstrated that chronic active lesions (CALs) constitute a substantial proportion of MS pathology, accounting for up to 57% of all lesions, 1 with a higher prevalence in secondary progressive MS (SPMS) compared with relapsing-remitting MS (RRMS). 1 Imaging biomarkers of CALs are slowly expanding lesions (SELs) and paramagnetic rim lesions (PRLs).
SELs are characterized by concentric and linear expansion on serial T1-weighted and/or T2-weighted scans (which are conventional MRI scans) using nonrigid, longitudinal, deformation-based analysis. 2 SELs are observed in all MS phenotypes, 2 although more prominent in progressive MS 3 and predict disability progression 4 ; they may represent an underlying mechanism of progression independent of relapse activity (PIRA). 5 Although lacking a complete histopathologic validation, 6 a recent immunologic and molecular profiling study reported that SELs are characterized by a hypocellular core and a rim of macrophages/microglia at the lesion edge, where ongoing myelin degradation and axonal damage occur. 7 Resident microglia with M1 (proinflammatory phenotype) differentiation were detected at the lesion edge. 7 Gene expression profiling of SEL borders further revealed upregulation of immune-related and inflammation-related pathways, including genes involved in microglial activation, lipid metabolism, and neurodegeneration, supporting a central role for microglia-driven chronic inflammation in lesion expansion. 7 Current studies show considerable variability in SEL detection methods and reported prevalence.
PRLs are detected on susceptibility-sensitive MRI; they show a paramagnetic rim, which reflects iron-laden activated microglia/macrophages at the lesion edge, and a T2-hyperintense core, which does not enhance with gadolinium contrast agent. 2 One study has shown that SELs are much more numerous than PRLs, and only a minority of SELs is known to have PRL features. 8 The proportion of overlap between SELs and PRLs across studies is unknown.
Given the growing interest in SELs as biomarkers of chronic active inflammation and their potential clinical applicability, robust pooled estimates are needed to better define their burden across MS populations and inform their use in clinical and research settings. The aims of this study were to establish the pooled proportion of SELs out of all T2 lesions in people with MS and the proportion of patients with at least 1 SEL, together with the pooled per-patient mean volumes of SELs. As a secondary aim, we investigated the pooled proportion of SELs that overlap with PRLs.
Methods
Standard Protocol Approvals, Registrations, and Patient Consents
This systematic review with meta-analysis was conducted based on our published protocol (PROSPERO CRD42024603778) and reported according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement 9 (eAppendix 1 and 2) and the Meta-analysis of Observational Studies in Epidemiology guidelines 10 (eAppendix 3). Deviations from the original PROSPERO-registered protocol are detailed in eAppendix 4.
Search Strategy
We conducted a systematic review of all peer-reviewed, published studies reporting the prevalence of SELs in people with MS published before February 2, 2026, in 4 databases, including PubMed, Scopus, Web of Science, and Embase (eAppendix 5). In PubMed and Scopus, searches were restricted to studies published in English and involving human subjects. Furthermore, the reference lists of all included studies were manually screened to identify further eligible publications.
Selection Criteria
First, all records were automatically deduplicated using Rayyan. 11 Titles and abstracts were then screened on Rayyan independently by 2 reviewers (A.L. and V.S.T.), blinded to each other's decisions. Abstracts not meeting the inclusion criteria were excluded, and disagreements were resolved by consensus with a third reviewer (A.A.). Full-text screening was subsequently performed independently by the same reviewers, with conflicts resolved using the same procedure. To identify potential duplicate reporting of cohorts, corresponding authors were contacted when necessary. Studies were eligible for inclusion if they met the following criteria: (1) included adult patients (aged 18 years or older) with MS according to the McDonald criteria (any version), (2) involved MRI acquisitions including T1-weighted and/or T2-weighted sequences and fluid-attenuated inversion recovery (FLAIR) sequences, (3) reported data on the number and/or volume of SELs, and (4) were written in English. No restrictions were applied with respect to geographic region or clinical setting. Manuscripts were excluded if they (1) were review articles, letters, editorials, opinions, or conference abstracts; (2) were based on postmortem findings or imaging techniques other than conventional MRI; and (3) involved preclinical models. When multiple publications reported data from the same cohort, all relevant prevalence estimates were considered; however, only 1 study per cohort was included in each meta-analysis. For 2 overlapping cohorts one study was included in lesion-level and mean volume analyses, 13 while the other was included in patient-level meta-analysis, 12 according to data availability (following direct correspondence with the authors). When required data were missing, corresponding authors were contacted (with 1 follow-up); studies were excluded if data remained unavailable.
Data Extraction
Data were extracted from each study using a structured coding scheme in Excel, including the following details: study characteristics (design and study time frame); patients' cohorts characteristics (sample size, sex, mean age, MS phenotype, disease duration, baseline Expanded Disability Status Scale [EDSS] scores, duration of follow-up, and disease-modifying therapy [DMT] exposure); MRI scan characteristics (scanner field strength and scanner type); number and volume of SELs and total T2 lesions; methodological information related to SEL identification, including imaging sequences used for primary SEL detection and lesion masking; the minimum expansion threshold applied, concentricity, and constancy criteria; and the time frame of SEL identification. Disagreements were resolved by discussion or adjudication by a third reviewer (A.A.). Authors of included studies were contacted for clarification or additional data if necessary.
Quality Assessment
Methodological quality of all articles was independently evaluated by 2 reviewers (A.L., A.C.) using the Joanna Briggs Institute Critical Appraisal Checklist for Studies Reporting Prevalence Data, 13 which assesses key domains including sample representativeness, sampling methods, adequacy of sample size, validity and reliability of outcome measurement, completeness of data, and appropriateness of statistical analysis. A total quality score from 0 to 9 was calculated for each study (eAppendix 6). Although some cohorts originated from randomized controlled trials (RCTs), SEL outcomes were derived from post hoc imaging analyses; therefore, these cohorts were appraised as observational studies for prevalence estimation.
Data Synthesis and Statistical Analysis
The primary outcomes of this study were the pooled proportion of SELs out of all T2 lesions, the proportion of patients with at least 1 SEL, and the pooled per-patient mean volumes of SELs and total T2 lesions. Descriptive statistics, including means and standard deviations, were calculated using automated statistical processing tools to standardize data extraction and ensure methodological consistency across studies. 14 R version 4.5.0 was used for the quantitative synthesis of our results. 15 We built a generalized linear mixed-effects model 16,17 for proportional meta-analyses with the employment of the “meta” package, fitting a logistic regression model but also including random-effects, because of the expected between-study heterogeneity. Before pooling, proportions were transformed using the Freeman-Tukey double arcsine method to stabilize variance. 17 To synthesize continuous variables, we conducted random-effects meta-analyses of continuous outcomes using untransformed (raw) mean values to estimate pooled lesion volumes of SELs and T2 lesions from individual study arms. Pooled estimates were calculated using the inverse variance method. The restricted maximum likelihood approach was used as an estimator for between-study variance and Hartung-Knapp adjustment for CIs. Between-study variance was quantified using tau-squared (τ 2 ) as an absolute measure of heterogeneity. Between-study heterogeneity was further assessed using the I 2 statistic 18 (<40%: low, >75%: significant heterogeneity) and Cochran Q test. 18 Meta-analysis results were presented in forest plots showing pooled proportions and their corresponding 95% CIs, and publication bias was assessed using funnel plots. Influence and outlier assessments were performed using sensitivity analyses to evaluate the robustness of pooled estimates. For analyses of mean lesion volumes and the pooled proportion of SELs also identified as PRLs, sensitivity analyses were conducted by excluding the study with the widest CI. Pooled estimates and heterogeneity metrics were recalculated, whereas the primary analyses including all studies were retained and reported. These analyses were performed solely to assess robustness and not to exclude studies from the primary analyses.
To explore potential sources of between-study heterogeneity, we performed subgroup analyses based on MS phenotype, SEL identification methodology and study design, as well as exploratory univariable meta-regression analyses within the same random-effects framework. Lesion-level SEL prevalence was modelled on the logit scale, using the number of SELs relative to total number of T2 lesions per study. Study-level covariates were examined individually as moderators, including time frame used for SEL identification, mean age, disease duration, baseline EDSS, proportion of patients receiving any DMT, proportion receiving high-efficacy DMT, proportion receiving non–high-efficacy DMT, proportion receiving no DMT, and MRI scanner field strength. All meta-regression analyses were conducted on an exploratory basis and were not intended to adjust pooled prevalence estimates. Although detailed imaging variables were extracted, these were not included in subgroup or meta-regression analyses because of heterogeneity in definitions and reporting, as well as the limited number of studies.
Data Availability
This study synthesizes previously published data and does not involve the collection of original human or animal data. Additional data are provided in the Supplementary Material.
Use of AI
ChatGPT 5.0 (OpenAI, 2026) was used to assist with language refinement and clarity describing the meta-regression analysis (eMethods, eAppendix 7) and to create the comparison of the initial and final PROSEPRO protocols (eAppendix 4). All outputs were reviewed and verified by the authors, who take full responsibility for the content.
Results
Search Results
A total of 5,980 records were identified through the initial database search. After deleting the duplications, 3,026 unique studies remained. After title and abstract screening, 173 full-text articles were assessed for eligibility, of which 153 were excluded (reasons for exclusion were not mutually exclusive). Ultimately, 20 studies, published between 2016 and 2025, met all inclusion criteria 3,4,8,12,19-34 and were included in the final analysis (eAppendix 8). eFigure 1 summarizes the screening process using a PRISMA flow diagram 35 (eAppendix 9).
Studies' and Patients' Characteristics
Twenty studies, including 4,786 patients, were included in the meta-analysis: 5 were observational prospective cohort studies, 4,20,21,24,34 8 were observational retrospective cohort studies, 8,12,19,26,27,29,31,32 and 7 were secondary analyses of RCTs. 3,22,23,25,28,30,33 Although a proportion derived from RCT data sets, SEL outcomes were obtained from post hoc imaging analyses and were therefore treated as observational for prevalence estimation. Study sample sizes ranged from 15 to 1,889 patients. Baseline MS phenotypes were RRMS (number of patients [N] = 2,514), SPMS (N = 1,439), primary progressive MS (PPMS) (N = 673), progressive-relapsing MS (PRMS) (N = 1), and clinically isolated syndrome (CIS) (N = 8). One study did not specify the MS phenotype. 29 The mean proportion of female participants was 63.7% (range 52.9%–80%). The mean age and disease duration across studies ranged from 35.5 to 55.9 years and 4.4 to 20 years, respectively, and the mean follow-up period was 3.2 ± 2 years, although these variables were incompletely reported across studies. The mean EDSS score varied across studies (0–6.0), reflecting variability in clinical severity. MRI field strengths included 1.5T, 3T, and 7T. SELs were most commonly located in deep white matter and periventricular regions, followed by juxtacortical areas and rarer cortical and deep gray matter involvement. 3,20,22,26 Across studies, SEL identification relied on longitudinal MRI assessments using at least 2 serial time points; however, the number and timing of imaging assessments varied, ranging from 2 time points (i.e., baseline and a single follow-up scan) 8,12,19,20,24,26,27,34 to multiple, repeated assessments over extended follow-ups. 21-23,25,28,30-33 Fixed imaging schedules were used in most studies, 12,19-23,25,28,30-34 whereas others reported variable 8,24,26,27 or incompletely specified imaging intervals. 29 Detailed study and patient characteristics are summarized in Table 1 , while MRI acquisition and SEL identification techniques are summarized in Table 2 .
Table 1
Studies' and Patients' Characteristics
Abbreviations: CIS = clinically isolated syndrome; DMT = disease-modifying treatment; EDSS = Expanded Disability Status Scale; F = female; HE-DMT = high efficacy-disease-modifying treatment; M = male; MC = multicenter; MS = multiple sclerosis; NHE-DMT = non–high efficacy-disease-modifying treatment; PPMS = primary progressive multiple sclerosis; PRMS = progressive-relapsing multiple sclerosis; RCT = randomized controlled trial; RRMS = relapsing-remitting multiple sclerosis; SEL = slowly expanding lesion; SC = single center; SPMS = secondary progressive multiple sclerosis. HE-DMT: Alemtuzumab, cladribine, evobrutinib, fingolimod, natalizumab, ocrelizumab, ofatumumab, opicinumab, ozanimod, rituximab, and siponimod. NHE-DMT: Dimethyl fumarate, glatiramer acetate, interferon β-1a, interferon β-1b, peginterferon β-1a, and teriflunomide. a Analyzed cohort for the presence of SELs. b n = 554. c Means and SDs were calculated using an automated tool. 13
| Study | Study design | SC/MC | Time frame | Sample size | MS phenotype at baseline | Age, y, mean ± SD | Sex | Disease duration, y, mean ± SD | Time frame for SEL identification, wk | Follow-up, y, mean ± SD | EDSS at baseline, mean ± SD | Type of DMT used |
| Fox et al. (2016) 20 | Prospective observational cohort study | SC | Not specified | 92 | 2 CIS 69 RRMS 16 SPMS 4 PPMS 1 PRMS | 54.5 ± 8.7 c | 67 F 25 M | 12 ± 6.9 | Baseline, 48 | 1 | 3 ± 1.5 | HE-DMT: 4 NHE-DMT: 61 No DMT: 23 |
| Absinta et al. (2019) 21 | Prospective observational cohort study | SC | 2012–2018 | 23 a | 23 RRMS | 54 ± 10 | 13 F 10 M | 20.0 ± 7.0 | Baseline, and yearly for at least 10 y | 14 ± 5 | Not specified | Not specified |
| Elliott et al. (2018) 22 | Retrospective analysis of RCT | MC | Not specified | 1889 | OPERA I, II: 1334 RRMS ORATORIO: 555 PPMS | OPERA I, II: 37.3 ± 9.2 ORATORIO: 44.9 ± 7.9 | 1149 F 740 M | OPERA I, II: 6.5 ± 6.1 ORATORIO: 6.4 ± 3.7 | OPERA I, II: baseline, 24, 48 ORATORIO: baseline, 24, 48 | Not specified | OPERA I, II: 2.7 ± 1.3 ORATORIO: 4.6 ± 1.2 b | HE-DMT: 1309 NHE-DMT: 835 Placebo: 244 |
| Elliott et al. (2020) 23 | Retrospective analysis of RCT | MC | 2013–2016 | 299 | 242 RRMS 57 SPMS | 39.3 ± 3 c | 196 F 103 M | Not specified | Baseline, 4, 8, 12, 16, 20, 24, 48, 72 | 1.5 | Not specified | Not specified |
| Klistorner et al. (2020) 19 | Retrospective observational cohort study | MC | Not specified | 33 | 33 RRMS | 42.6 ± 10.3 | 20 F 13 M | 6.5 ± 2.8 | Baseline, 48 | 5 | 1.1 ± 1 | HE-DMT: 15 NHE-DMT: 17 No DMT: 1 |
| Klistorner et al. (2021) 12 | Retrospective observational cohort study | MC | Not specified | 34 | 34 RRMS | 42.6 ± 9.8 | 18 F 12 M | 6.1 ± 2.9 | 12 (termed “baseline”), 60 | 5 | 1 ± 1 | HE-DMT: 17 NHE-DMT: 15 No DMT: 2 |
| Moog et al. (2022) 24 | Prospective observational cohort study | SC | Not specified | 35 | 35 RRMS | 40.1 ± 9.3 c | 22 F 7 M | 9.4 ± 5.3 c | Baseline, ≥24 | 2 ± 0.7 c | 0 ± 0 c | HE-DMT: 14 NHE-DMT: 18 |
| Preziosa et al. (2022) 4 | Prospective longitudinal cohort study | SC | 2011–2016 | 52 | 52 RRMS | 36.8 ± 9.7 | 30 F 22 M | 9.8 ± 6.5 | Baseline, 24, 48, 96 | 8.7 ± 1.4 c | 2.3 ± 2.9 c | HE-DMT: 52 |
| Beynon et al. (2022) 25 | Retrospective analysis of RCT | MC | 2011–2016 | 887 | 887 SPMS | 47.3 ± 7.6 | 550 F 337 M | Not specified | Baseline, 24, 48, 72, 96, 108 | 2 | Not specified | HE-DMT: 439 Placebo: 448 |
| Weber et al. (2022) 26 | Retrospective observational cohort study | SC | Not specified | 43 | 36 RRMS 7 SPMS | 40.8 ± 11.2 c | 33 F 10 M | Not specified | Baseline, ≥48 | 4 | 2.8 ± 1.4 c | Baseline: HE-DMT: 13 NHE-DMT 17 No DMT: 13 Last Follow-up: HE-DMT: 21 NHE-DMT: 14 No DMT: 8 |
| Calvi et al. (2022a) 3 | Retrospective analysis of RCT | MC | 2015–2016 | 345 | 345 SPMS | 55.6 ± 1.8 c | 230 F 115 M | 19.8 ± 1.2 c | Baseline, 24, 96 | 2 | 6 ± 0.2 c | No DMT: 345 |
| Calvi et al. (2022b) 27 | Retrospective observational cohort study | MC | Not specified | 135 | 135 RRMS | 35.5 ± 9 | 99 F 36 M | 10.9 ± 6.2 c | Variability of time intervals; baseline, ≥48 | 6.5 ± 2.3 c | 2.1 ± 1 c | Type of DMT not specified at baseline: 66 Type of DMT not specified at the last follow-up: 102 |
| Calvi et al. (2023) 8 | Retrospective observational cohort study | MC | Not specified | 61 | 6 CIS 55 RRMS | 37 ± 11 c | 42 F 19 M | 4.4 ± 3.6 c | Variability of time intervals; baseline, ≥33.6 | 3.9 ± 1.6 c | 1.9 ± 1 c | Any DMT: 51 |
| Elliott et al. (2023) 28 | Retrospective analysis of RCT | MC | 2017–2021 | 41 | 41 RMS | 38.3 ± 11.5 c | 27 F 14 M | 5.5 ± 1.8 c | Baseline, 24, 48, 72 | 1.5 | 2.5 | HE-DMT: 15 NHE-DMT: 26 |
| Federau et al. (2024) 29 | Retrospective observational cohort study | MC | Not specified | 117 | Not specified | 46.5 ± 13.9 c | 81 F 36 M | Not specified | Not specified | Not specified | Not specified | Not specified |
| Arnold et al. (2024) 30 | Retrospective analysis of RCT | MC | 2017–2018 | 261 | 228 RRMS 33 SPMS | 42.4 ± 10.7 c | 181 F 80 M | Not specified | Baseline, 12, 16, 20, 24, 48, and 96 | 2 | Not specified | HE-DMT: 207 NHE-DMT: 54 |
| Yokote et al. (2024) 31 | Retrospective observational cohort study | MC | 2016–2022 | 99 | 99 RRMS | 40.3 ± 8.6 c | 74 F 25 M | 9.6 ± 7.1 c | Baseline, 24, 48, 72, 96 | 2 ± 0.2 | 2 ± 0.6 c | HE-DMT: 42 NHE-DMT: 49 |
| Huerta et al. (2024) 32 | Retrospective observational cohort study | SC | Not specified | 15 | 15 RRMS | 42.4 ± 5.6 | 12 F 3 M | 8.5 ± 4.1 | Baseline, 24, 48 | 1 | 2.7 ± 1.6 c | HE-DMT: 15 |
| Nakamura et al. (2024) 33 | Retrospective analysis of RCT | MC | 2013–2017 | 195 | 107 PPMS 88 SPMS | 55.9 ± 7 | 112 F 83 M | Not specified | Baseline, 24, 48, 72, 96 | 2 | 5.3 ± 1.5 c | NHE-DMT: 97 Placebo: 98 |
| Calvi et al. (2025) 34 | Prospective observational cohort study | SC | 2011–2025 | 130 | 117 RRMS 7 PPMS 6 SPMS | 41.8 ± 10.9 c | 93 F 37 M | 7.7 ± 8 c | Baseline, 25 | 8.13 ± 3.8 c | 1.5 ± 0.8 c | Any DMT: 94 No DMT: 36 |
Table 2
MRI Scan Characteristics and Segmentation Methods
Abbreviations: ANT = advanced normalization tool; CAGR = compound annual growth rate; Gd = gadolinium; GE = General Electric; FLAIR = fluid-attenuated inversion recovery; JE1 = Jacobian Expansion between baseline and time point 1; JE2 = Jacobian expansion between baseline and time point 2; SEL = slowly expanding lesion; SPM12 = Statistical Parametric Mapping software 12; T1w = T1 weighted; T2w = T2 weighted.
| Study | Field strength | Scanner model (manufacturer) | Methodology of SEL identification | Sequence(s) for primary identification of SELs | Sequence(s) for lesion mask | Minimum voxels for identification of SELs | JE1 | JE2 | Concentricity | Constancy |
| Fox et al. (2016) 20 | 1.5T | Siemens Avanto, Erlangen, Germany | Automated tool | T1w | Not specified | Not specified | Not specified | Not specified | Not specified | Not specified |
| Absinta et al. (2019) 21 | 7T | Siemens Magnetom | Manually | T2* and phase contrast | T2* | CAGR ≥1% | Not specified | Not specified | Not specified | Not specified |
| Elliott et al. (2018) 22 | 1.5T and 3T | Not specified | ANTs | T1w and T2w | T2 | 10 | 12.5% | 4% | ≥0 | ≥0 |
| Elliott et al. (2020) 23 | 1.5T and 3T | Not specified | ANTs | T1w and T2w | T2 | 10 | 12.5% | 4% | ≥0 | ≥0 |
| Klistorner et al. (2020) 19 | 3T | GE Discovery MR750 | Automated in-house software package | FLAIR | FLAIR | 50 | 10% | — | — | — |
| Klistorner et al. (2021) 12 | 3T | GE Discovery MR750 | Automated in-house software package | FLAIR | FLAIR | 100 | 10% | — | — | — |
| Moog et al. (2022) 24 | 3T | Philips Medical Systems, Cleveland, OH | In-house software package | T1w and T2w | FLAIR and T2w | 3 mm 3 and nonconfluent | Not specified | Not specified | Not specified | Centroid movement |
| Preziosa et al. (2022) 4 | 3T | Intera, Philips Medical Systems, Best, The Netherlands | SPM12 | T1w and T2w | T2 | 10 | 12.5% over 2 y | 4% | ≥0 | ≥0 |
| Beynon et al. (2022) 25 | 1.5T and 3T | Not specified | ANTs | T1w and T2w | T2 | 10 and not Gd+ | 12.5% | 4% | ≥0 | ≥0 |
| Weber et al. (2022) 26 | 3T | MAGNETOM Skyra, Siemens, Erlangen, Germany | I Automated in-house tool | T1w | FLAIR | 5 mm in long axis | — | — | — | — |
| Calvi et al. (2022a) 3 | 1.5T and 3T | Not specified | NiftyReg | T1w | FLAIR | 10 | 12.5% | 4% | ≥0 | ≥0 |
| Calvi et al. (2022b) 27 | 1.5T and 3T | Gyroscan, Philips Healthcare, Best, The Netherlands, and Achieva, Philips, Eindhoven, The Netherlands | NiftyReg | T1w | FLAIR | 10 | 12.5% | 4% | ≥0 | ≥0 |
| Calvi et al. (2023) 8 | 3T | Tim Trio; Siemens, Erlangen, Germany | NiftyReg | T1w | FLAIR | 10 | 12.5% | 4% | ≥0 | ≥0 |
| Elliott et al. (2023) 28 | 3T | Not specified | ANTs | T1w and T2w | T2 | 10 | 12.5% | 4% | ≥0 | ≥0 |
| Federau et al. (2024) 29 | 1.5T and 3T | GE, Siemens, and Philips | Jazz | FLAIR | ||||||
| Arnold et al. (2024) 30 | 1.5T and 3T | Not specified | ANTs | T1w and T2w | T2 | 10 | 12.5% | 4% | ≥0 | ≥0 |
| Yokote et al. (2024) 31 | 1.5T and 3T | (T) Vantage Titan (Canon), MAGNETOM Spectra (Siemens), Discovery MR750w (GE Healthcare), and MAGNETOM Aera (Siemens) | ANTs | T1w | FLAIR | 10 | 12% | 8% | ≥0 | ≥0 |
| Huerta et al. (2024) 32 | 7T | Siemans Magnetom (Siemens Healthineers) | SPM12 | T1w | FLAIR | 10 | 12.5% | 4% | ≥0 | ≥0 |
| Nakamrura et al. (2024) 33 | 3T | Siemens or GE | ANTs | T1w and T2w | T2 | 10 | 12.5% | 4% | ≥0 | ≥0 |
| Calvi et al. (2025) 34 | 3T | Siemens Magnetom Trio/Prisma | NiftyReg | T1w and T2w | FLAIR | 10 | 12.5% | 4% | ≥0 | ≥0 |
Methodology of SEL and PRL Detection
All studies, except 1, 21 used automated tools to identify SELs. Most used Jacobian (deformation-based) methods ( Figure 1 ), 36 using various software packages, such as advanced normalization tools (ANTs), Statistical Parametric Mapping 12 (SPM12), or NiftyReg; 5 studies used in-house automated software, based on lesional volumetric change. 12,19,20,24,29

In studies using the Jacobian analysis method, SELs were defined as lesions with concentric, gradual, linear expansion over time on serial T1-weighted and/or T2-weighted scans, measuring at least 10 voxels in size and exhibiting local expansion. 3,4,8,22,23,25,27,28,30-34 In these studies, except 1, 31 the minimum local expansion used to define voxels within the SELs mask was 4% per year. In 2 studies, lesion expansion was identified using a custom-designed algorithm, with a threshold of 50 19 or 100 voxels 12 ( Table 2 ). For the identification of SELs, T1-weighted and/or T2-weighted images were used in all studies, except for 3 studies, in which SELs were identified on FLAIR images using an in-house tool. 12,19,29
PRLs were identified using susceptibility-weighted imaging (SWI) and phase-based techniques, acquired at varying field strengths (e.g., 1.5T, 3T, and 7T). 8,21,28 Across studies, PRL detection relied on expert visual assessment of the presence of a partial or complete hypointense rim at the edge of nonenhancing T2 lesions, confirmed on consecutive slices and across orthogonal planes, with exclusion of potential mimics (e.g., veins or susceptibility artefacts), although specific criteria varied across studies.
Meta-Analysis
Sixteen reports from 15 original studies, including 4,240 people with MS, 3,4,8,19,22-28,30-32,34 were included in the lesion-level analysis, yielding a pooled SEL proportion (out of all T2 lesions) of 14% (95% CI 10%–21%) with high between-study heterogeneity ( I 2 = 99.7%) ( Figure 2A ). Seventeen reports from 16 original studies, including 4,434 people with MS, 3,4,8,12,20,22-31,34 were included in the patient-level analysis, yielding a pooled proportion of patients with at least 1 SEL of 78% (67%–85%) with high between-study heterogeneity ( I 2 = 95.1%) ( Figure 2B ). Mean per-patient volumes, pooled from 14 studies with a total of 4,189 people with MS, 3,4,8,19,22,23,25,27,28,30,31,33,34 were 2.32 mL (0.12–4.51) for SELs and 11.03 mL (8.86–13.21) for total T2 lesions, with high between-study heterogeneity ( I 2 = 99% and I 2 = 99%, respectively) ( Figure 3 ). To estimate the pooled proportion of SELs that were also identified as PRLs, we pooled 3 studies, including 125 people with MS. 8,21,28 The pooled proportion was 27% (5%–71%), with high between-study heterogeneity ( I 2 = 95.9%) ( Figure 4 ).



Subgroup Analysis, Outlier Detection, Influence and Sensitivity Analysis, and Meta-Regression
To explore potential sources of heterogeneity, we compared RRMS with progressive MS (PMS; including both PPMS and SPMS). Although lesion-level prevalence was similar between the 2 groups, with high between-study heterogeneity (RRMS: 15% [7%–28%, I 2 = 99.7%]; PMS: 15% [9%–24%, I 2 = 99.9%]) (eFigure 2, eAppendix 9), the proportion of people with MS with at least 1 SEL was higher in PMS (87% [69%–95%, I 2 = 96%]) 3,4,22,23,25 than RRMS (76% [65%–85%; I 2 = 92.7%]) 4,8,12,20,22-24,27,28,31 (eFigure 3, eAppendix 9).
In Jacobian-only studies ( Figure 1 ) (N = 4,174 people with MS,) 3,8,25,27,30,31,34 lesion-level prevalence of SELs was 12% (8%–18%, I 2 = 99.7%) (eFigure 4, eAppendix 9). In addition, when subgroup analyses were performed according to study design, separating RCTs and observational studies, the proportion of SELs out of all T2 lesions was comparable between RCTs and observational cohorts (14% [10%–18%] vs 15% [8%–27%], respectively) (eFigures 5 and 6, eAppendix 9). By contrast, patient-level analyses showed a higher proportion of individuals with at least 1 SEL in RCT-derived cohorts (86% [75%–93%]) compared with observational studies (69% [55%–80%]) (eFigures 7 and 8, eAppendix 9). Between-study heterogeneity remained substantial in all subgroup analyses. Outliers affected 2 analyses: removing Absinta et al. 21 reduced pooled proportion of SELs identified as PRLs to 11% (6%–20%, I 2 = 95.1%) (eFigure 9, eAppendix 9) and excluding Calvi et al. 8 lowered pooled mean volumes to 1.42 mL (0.79–2.06, I 2 = 99.1%) for SELs and 10.6 mL (8.53–12.67, I 2 = 96%) for total T2 lesions (eFigure 10, eAppendix 9). However, heterogeneity remained high, indicating potential residual variability across the remaining studies.
Exploratory univariable meta-regression analyses did not identify significant associations between SEL prevalence and the examined study-level variables at either the lesion or patient level ( Table 3 ). At both the lesion and patient levels, pooled proportion of SELs showed no significant correlation with the interval from baseline to final MRI (ρ = −0.01, p = 0.1 for both analyses) or with mean age (ρ = 0.04, p = 0.5; ρ = 0.08, p = 0.18). At the patient level, exploratory analyses suggested possible trends toward a higher proportion of SEL-positive patients among those not receiving DMTs (ρ = 19.4, p = 0.06) and a lower proportion among those receiving DMTs (ρ = −20.9, p = 0.05); however, these associations did not reach statistical significance.
Table 3
Meta-Regression Analysis of Study-Level Moderators at Lesion and Patient Levels
Abbreviations: DMT = disease-modifying treatment; EDSS = Expanded Disability Status Scale; HE-DMT = high efficacy-disease-modifying treatment; NHE-DMT = non–high efficacy-disease-modifying treatment; RRMS = relapsing-remitting multiple sclerosis; SEL = slowly expanding lesion.
| Variables | Lesion level | Patient level | ||||
| Residual heterogeneity I 2 (%) | Estimate | p Value | Residual heterogeneity I 2 (%) | Estimate | p Value | |
| Time frame of SEL identification | 99.85 | −0.01 | 0.10 | 99.85 | −0.01 | 0.10 |
| Mean age | 99.88 | 0.04 | 0.40 | 96.76 | 0.08 | 0.18 |
| Disease duration | 99.88 | −0.001 | 0.98 | 96.11 | 0.13 | 0.15 |
| Baseline EDSS | 99.86 | −0.05 | 0.79 | 96.32 | 0.33 | 0.15 |
| Percentage of patients received any DMT | 99.88 | 0.02 | 0.90 | 96.49 | −20.9 | 0.05 |
| Percentage of patients received HE-DMT | 99.92 | −0.13 | 0.32 | 98.14 | −10.46 | 0.38 |
| Percentage of patients received NHE-DMT | 99.82 | 0.14 | 0.70 | 95.3 | 5.27 | 0.66 |
| Percentage of patients received no DMT | 99.87 | −2.13 | 0.85 | 96.62 | 19.14 | 0.06 |
| Tesla strength of the scanner | 99.90 | 7.0T: 0.80 3.0T: 0.66 | 0.30 | 97.70 | −0.34 | 0.56 |
| Proportion of RRMS | — | — | — | 96.62 | −1 | 0.16 |
Quality Assessment
Three studies were assessed as having low risk of bias, 16 as moderate risk of bias, and 1 as high risk of bias (eTable 1, eAppendix 9). The domains most frequently contributing to risk of bias involved sample representativeness and selection (Q1–Q3) and incomplete reporting of response rates (Q9).
Discussion
This systematic review and meta-analysis show that SELs account for a minority of T2 lesions (14% [10%–21%]), but most patients (78% [67%–85%]) have at least 1 SEL, with mean per-patient volumes of 1.42 mL (0.79–2.06) for SELs and 10.6 mL (8.53–12.67) for total T2 lesions, after leave-one-out sensitivity analysis. The similar proportion of SELs out of all T2 lesions between RRMS and PMS (15% [7%–28%]), together with the higher proportion of patients with SELs in PMS than RRMS (87% [69%–95%] vs 76% [65%–85%]), suggests that SELs may be more widespread at the patient level in progressive MS, without clear evidence from these data of differences in lesion-level propensity among existing T2 lesions. Proportion of SELs out of all T2 lesions was similar in RCT-derived and observational cohorts. However, the higher proportion of patients with at least 1 SEL in RCTs (86% [75%–93%]) than in observational studies (69% [55%–80%]) suggests that cohort selection, imaging protocols, and longitudinal study design may influence patient-level prevalence estimates, rather than the difference necessarily reflecting underlying biology. The persistence of substantial heterogeneity across all subgroup analyses further indicates that study design alone does not account for the observed variability, highlighting the influence of methodological and population-related factors.
The partial overlap (11% [6%–20%]) between SELs and PRLs reinforces that these markers capture related but noninterchangeable aspects of chronic active inflammation. This is consistent with recent meta-analytic data showing that PRLs are present in approximately 12% of lesions and in about half of people with MS, 37 indicating that only a subset of chronic active lesions exhibits paramagnetic rims. This observation may also be influenced by methodological differences in PRL identification across studies. PRLs were detected using susceptibility-sensitive MRI sequences, including SWI and phase-based techniques, acquired at varying field strengths (e.g., 1.5T, 3T, and 7T). 8,21,28 In addition, PRL detection relied on visual assessment, with differences in criteria such as whether a partial or a complete hypointense rim was required and how confirmation across consecutive slices was implemented. Such variability may influence the sensitivity and specificity of PRL detection and, consequently, contribute to heterogeneity in the reported overlap estimates. SELs are defined by linear and concentric volumetric expansion over time, whereas CALs may follow more heterogeneous growth trajectories, and not all exhibit iron rims, as shown histopathologically. 38 Moreover, although paramagnetic rims may persist for up to 7 years, longitudinal imaging studies suggest that PRLs typically expand only during the first 3.5 years before reaching a plateau in volume, 39,40 consistent with their low-incidence, as reported in a recent meta-analysis. 37 Lesions exhibiting both features are strongly associated with PIRA and future evolution to PIRA 22,41 underscoring the complementary value of these imaging markers.
The meta-regression did not identify a statistically significant association between the estimated pooled proportion of SELs out of all T2 lesions and the length of the interval between baseline and the final MRI assessment used for SEL identification. Nevertheless, variability in imaging intervals and acquisition schedules across studies may plausibly influence SEL detection through both technical and biological mechanisms. From a technical perspective, longer intervals between scans may improve the robustness of Jacobian-based detection by reducing noise in volumetric measurements. From a biological perspective, lesion expansion is unlikely to proceed at a constant rate over time and may attenuate or stabilizes as lesions evolve, 36 potentially reflecting changes in underlying inflammatory activity 36 or the effects of treatment. 22,25,30,42 In addition, differences in the duration of observation and the number of imaging time points may affect the ability to distinguish transient or acute lesion enlargement from sustained, low-grade expansion, with shorter intervals more likely to capture episodic inflammatory changes and longer observation periods favoring the identification of lesions with persistent expansion consistent with chronic active inflammation. These findings are accompanied by a nonsignificant negative trend between patient-level SEL prevalence and treatment exposure (ρ = −20.9, p = 0.05), which, however, should be interpreted cautiously and does not permit inference regarding treatment effects on chronic lesion activity.
Age is a critical determinant of disease trajectory in MS, influencing clinical progression, neurodegenerative processes, immune senescence, and therapeutic responsiveness. 43 However, meta-regression analyses did not identify a statistically significant association between SEL prevalence and mean age nor did age explain between-study heterogeneity in SEL prevalence. SELs have also been reported in pediatric-onset MS, indicating that chronic lesion activity can begin early in the disease course. 44,45 Together, these observations suggest that age alone is insufficient to explain the distribution of SELs across MS populations. Chronic lesion activity may begin early in the disease course, challenging the traditional view that compartmentalized inflammation is a feature exclusive to progressive MS. 46 The widespread presence of SELs across all phenotypes further supports the concept of a disease continuum in which progressive pathologic mechanisms are active even in early stages. SELs were most frequently localized in periventricular and deep white matter, regions characteristically affected by focal demyelinating lesions. 47 Although this spatial pattern is consistent with conventional lesion distribution in MS, the presence of SELs suggests an overlay of chronic, smoldering inflammation, influenced by compartmentalized inflammation, ineffective resolution of tissue injury, and CSF-mediated gradients of damage. 39
Most studies used the Jacobian determinant to identify SELs, but implementation varied across tools (e.g., ANTs, SPM12, and NiftyReg). Variations in regularization strategies significantly affect SEL detection because each software applies distinct constraints on diffeomorphic transformations, making regularization choice critical for localizing volumetric differences. 48 This issue is linked to the robustness of the registration method, the transformation regularity, and the numerical scheme for computing the Jacobian determinant. 49 In nonlinear registration, deformation is determined by optimizing a similarity metric (i.e., normalized mutual information) between 2 images, so transformation quality is highly dependent on the chosen metric. Jacobian nonlinear transformation can precisely detect expanding lesions and estimate baseline volume but is confounded by intensity changes and boundary shifts, limiting true volumetric quantification. 22,36 Manual delineation is more accurate but is time consuming and requires long follow-up because of slow lesion progression and variability in masking. Beyond these technical considerations, alternative longitudinal strategies have sought to quantify lesion expansion through direct volumetric comparison of binary lesion masks across consecutive time points. 12,19 In such frameworks, scans are typically aligned to account for global brain atrophy, and lesion growth is defined as the net volumetric difference between masks rather than deformation-derived expansion. By relying on direct mask-based measurements, this approach may reduce spurious signals related to ventricular enlargement or lesion displacement over long follow-up periods, thereby reducing the risk of misclassifying displacement-related effects as true biological expansion. However, this increased specificity comes at the expense of feasibility because segmentation must be performed at each time point, limiting scalability in large cohorts. Thus, Jacobian-based approaches provide an approximation that can be modulated by different thresholds (e.g., Jacobian expansion 1 or 2) and z-scores ( Figure 1 ), whereas another proposed method 19 measures actual change, as derived from differences between consecutive binary lesion masks, with a set of logical rules determining the final lesion type. These differences highlight the need for standardized, reproducible frameworks that harmonize registration procedures, segmentation strategies, and expansion thresholds to improve comparability across studies.
Although most studies were judged to have low to moderate risk of bias, few were designed to estimate prevalence in population-representative samples. However, SEL identification was consistently performed using validated longitudinal MRI techniques, supporting strong internal validity.
The results of this meta-analysis should be interpreted in light of several limitations. Funnel plot asymmetry observed in our analyses suggests the possibility of publication bias (eFigures 11–13, eAppendix 9); however, this should be interpreted cautiously in the context of the substantial between-study heterogeneity. Funnel plot asymmetry may also reflect small-study effects, whereby smaller studies report more variable estimates, as well as genuine methodological and population differences across studies. In addition, the relatively small number of studies in some analyses and the use of proportional outcomes further limit the reliability of funnel plots for detecting publication bias. Accordingly, publication bias cannot be excluded and may have influenced the pooled estimates, particularly given the high heterogeneity observed across the proportional meta-analyses, as indicated by τ 2 and I 2 , which remained largely unexplained despite exploratory subgroup and meta-regression analyses. Methodological heterogeneity in SEL identification represents another source of variability. Differences in MRI acquisition protocols, including the use of 2-dimensional (2D) vs 3-dimensional (3D) sequences, may further contribute to between-study heterogeneity. Where 2D sequences were used for initial lesion delineation, images were subsequently transformed into 3D space for longitudinal analysis; however, variability in acquisition characteristics may still have influenced lesion detection and contributed to between-study heterogeneity. Although most studies used Jacobian-based approaches, implementation varied across image registration frameworks (e.g., ANTs, NiftyReg, and SPM12), lesion-masking strategies, expansion thresholds, and reporting of segmentation parameters, potentially affecting the sensitivity and specificity of SEL detection. Variability in the timing and number of MRI time points for SEL identification further complicates comparability because differences in imaging intervals influence noise and robustness in Jacobian-based measurements and likely contributed to the observed heterogeneity. Population-level heterogeneity also warrants consideration. Many included studies were secondary analyses of RCTs; while methodologically rigorous, restrictive eligibility criteria may limit generalizability to real-world MS populations. In addition, the inclusion of studies spanning different publication years introduced variability in diagnostic criteria, disease-modifying therapy exposure, and MRI protocols. Incomplete reporting of data further limited the ability of meta-regression analyses to explain heterogeneity. Finally, despite comprehensive database searches, relevant studies, written in language other than English, indexed elsewhere, or unpublished data may have been missed.
In conclusion, SELs account for approximately 14% of MRI-detected lesions and, while representing a subset of the total lesion burden in MS, are present in 78% of people with MS. Their occurrence across all MS phenotypes indicates that chronic lesion activity is not restricted to progressive disease stages and is also present in RRMS. After sensitivity analysis, approximately 11% of SELs were also PRLs, suggesting that a subset of SELs reflects CAL pathology. Standardized detection methods and large, well-characterized observational cohorts are needed to enable more consistent prevalence estimates and to define the true population-level burden of SELs.
Acknowledgment
The authors used ChatGPT (OpenAI, 2026) to improve the clarity and readability of the manuscript. The scientific content, interpretation, and conclusions were written entirely by the authors. All AI-suggested revisions were reviewed and approved by the authors.
Glossary
2-dimensional
3-dimensional
advanced normalization tool
chronic active lesion
clinically isolated syndrome
disease-modifying therapy
Expanded Disability Status Scale
fluid-attenuated inversion recovery
multiple sclerosis
progression independent of relapse activity
progressive multiple sclerosis
primary progressive multiple sclerosis
Preferred Reporting Items for Systematic Reviews and Meta-Analyses
paramagnetic rim lesion
progressive-relapsing multiple sclerosis
randomized controlled trial
relapsing-remitting multiple sclerosis
slowly expanding lesion
Statistical Parametric Mapping 12
secondary progressive multiple sclerosis
susceptibility-weighted imaging
Author Contributions
A. Liampas: drafting/revision of the manuscript for content, including medical writing for content; major role in the acquisition of data; study concept or design; analysis or interpretation of data. A. Artemiadis: drafting/revision of the manuscript for content, including medical writing for content; analysis or interpretation of data. V.-S. Tseriotis: acquisition of data; analysis or interpretation of data. F. Prados: drafting/revision of the manuscript for content, including medical writing for content. P. Preziosa: drafting/revision of the manuscript for content, including medical writing for content. A. Calvi: drafting/revision of the manuscript for content, including medical writing for content; analysis or interpretation of data. G. Hadjigeorgiou: drafting/revision of the manuscript for content, including medical writing for content. M.A. Rocca: drafting/revision of the manuscript for content, including medical writing for content. M. Filippi: drafting/revision of the manuscript for content, including medical writing for content. O. Ciccarelli: drafting/revision of the manuscript for content, including medical writing for content; study concept or design; analysis or interpretation of data.
Study Funding
The author(s) received no financial support for the research, authorship, and/or publication of this article.
Disclosure
A. Liampas has no personal pecuniary interests to disclose, other than having received travel grants from the European Academy of Neurology (EAN) and coverage of the registration fee and stay at EAN Congresses and Meetings. A. Artemiadis declares no conflict of interest. V.S. Tseriotis has no personal pecuniary interests to disclose, other than having received a travel grant from ECTRIMS and the European Academy of Neurology and coverage of the registration fee and stay at Greek Neurology Congresses and Meetings by Innovis and Genesis Pharma. F. Prados receives funding from National Institute for Health Research (NIHR), Biomedical Research Centre initiative at University College London Hospitals (UCLH). P. Preziosa received speaker honoraria from Roche, Biogen, Novartis, Merck, Bristol Myers Squibb, Genzyme, Horizon and Sanofi, he has received research support from Italian Ministry of Health and Fondazione Italiana Sclerosi Multipla. A. Calvi is currently supported by “fundación BBVA - Hospital Clinic Barcelona,” and within the past 5 years by the ECTRIMS and the UK MS Society. G.M. Hadjigeorgiou declares no conflict of interest. M.A. Rocca received consulting fees from Biogen, Bristol Myers Squibb, Roche; and speaker honoraria from Alexion, Biogen, Bristol Myers Squibb, Celgene, Horizon Therapeutics Italy, Merck Serono SpA, Mitsubishi-Tanabe Pharma, Neuraxpharm, Novartis, Roche, Sandoz, and Sanofi. She receives research support from the MS Society of Canada, the Italian Ministry of Health, the Italian Ministry of University and Research, and Fondazione Italiana Sclerosi Multipla; she is associate editor for Multiple Sclerosis and Related Disorders ; and associate co-editor for Europe and Africa for Multiple Sclerosis Journal . M. Filippi is editor-in-chief of the Journal of Neurology , associate editor of Human Brain Mapping , Neurological Sciences , and Radiology , received compensation for consulting services from Alexion, Almirall, Biogen, Merck, Novartis, Roche, Sanofi, speaking activities from Bayer, Biogen, Celgene, Chiesi Italia SpA, Eli Lilly, Genzyme, Janssen, Merck-Serono, Neopharmed Gentili, Novartis, Novo Nordisk, Roche, Sanofi, Takeda, and TEVA, participation in Advisory Boards for Alexion, Biogen, Bristol-Myers Squibb, Merck, Novartis, Roche, Sanofi, Sanofi-Aventis, Sanofi-Genzyme, Takeda: scientific direction of educational events for Biogen, Merck, Roche, Celgene, Bristol-Myers Squibb, Lilly, Novartis, Sanofi-Genzyme; he receives research support from Biogen Idec, Merck-Serono, Novartis, Roche, the Italian Ministry of Health, the Italian Ministry of University and Research, and Fondazione Italiana Sclerosi Multipla. O. Ciccarelli is an NIHR Research Professor (RP-2017-08-ST2-004), acts as a consultant for Biogen, Merck, Novartis, Roche, and Teva, and has received research grant support from the MS Society of Great Britain and Northern Ireland, the NIHR UCLH Biomedical Research Centre, the Rosetree Trust, the National MS Society, and the NIHR-HTA: receives funding from National Institute for Health Research (NIHR), Biomedical Research Centre initiative at University College London Hospitals (UCLH). Go to Neurology.org/N for full disclosures.
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Associated Data
Data Availability Statement
This study synthesizes previously published data and does not involve the collection of original human or animal data. Additional data are provided in the Supplementary Material.