Wnt and Nodal asymmetries stratify mouse laterality phenotypes in the absence of node flow.

Left-right symmetry breaking in mice is considered to occur via node leftward fluid flow. The molecular cascade within the node has been reconstructed at high resolution; however, its importance for organogenesis remains poorly understood. Here, we show in mutants for the motile cilium component CCDC40 that 70% of mice develop normal situs at birth despite abrogation of node flow. The discrete morphospace output, including situs inversus totalis and heterotaxy with left isomerism, supports an innovative model of symmetry breaking, in which node flow only biases asymmetry orientation, while a distinct mechanism, potentially self-amplifying, generates it. Longitudinal, quantitative, and paired transcriptomic analyses uncover the molecular signature of laterality clusters, highlighting WNT in addition to NODAL pathways. We identify asymmetry of cardiopulmonary progenitors, the disruption of which is associated with combined heart and lung defects in mutants. Functional pharmacological perturbation reinforces the importance of WNT, besides the node, in the establishment of asymmetry.