Ectoparasite-borne Bartonella and Rickettsia in Chilean populations of Rattus rattus: prevalence, genetic diversity and environmental associations.

Rattus rattus is a known reservoir of zoonotic pathogens, including Bartonella and Rickettsia, transmitted by ectoparasites such as fleas, mites, lice and ticks. The circulation of Bartonella and Rickettsia in these vectors in Chile remains poorly characterized. To evaluate the association between ectoparasite abundance, prevalence and diversity (including lice, fleas, mites and ticks) and the presence of Bartonella and Rickettsia within ectoparasites collected from R. rattus across different anthropogenic gradients in Chile, a total of 1,339 ectoparasites were collected from 411 R. rattus individuals across 27 localities. Ectoparasites were identified morphologically, and molecular detection of bacteria was performed using conventional and qPCR, targeting multiple genetic markers. Haplotype diversity and phylogenetic relationships were assessed. Bartonella and Rickettsia DNA were detected in fleas, ticks, mites and lice of R. rattus, with prevalence values reported separately for pooled and individually analysed ectoparasites. Bartonella tribocorum, B. rochalimae and B. mastomydis were identified. Rickettsia felis was confirmed in multiple ectoparasite groups. High haplotype diversity was observed in Bartonella but not in Rickettsia. Urbanization and tick prevalence were negatively associated with Bartonella occurrence; flea and tick prevalences were negatively associated with Rickettsia. Rattus rattus and their ectoparasites harbour a diverse range of potentially zoonotic Bartonella and Rickettsia species. These findings highlight the need for integrated surveillance and vector control strategies, especially in areas with variable human-wildlife interaction.