BMC genomic data · 2026
Draft genome sequence of Staphylococcus saprophyticus strain 3M isolated from milk of cows with subclinical mastitis in Uganda.
СтатьяНазвание и аннотация: Перевод в очереди
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Muhwezi Reagan, Neel G R, Eilu Emmanuel, Sankarapandian Vidya, Shabohurira Ambrose, Abubakar Musoba, Pius Theophilus, Dilli Priscilla Peter, Tijani Naheem Adekilekun, Makeri Danladi
Аннотация
OBJECTIVE: This study presents the draft genome sequence of Staphylococcus saprophyticus strain 3M isolated from a cow with subclinical mastitis (SCM) in Kiruhura district, Uganda and explores the isolates resistance and virulence potential.
DATA DESCRIPTION: The assembled genome size was 2,791,445 bp with a 33% GC, 13 Contigs, Contig N50 2,589,240, Contig L50 1 and 2,791,440x Genome coverage. Check M analysis revealed 68.25% completeness. Average Nucleotide Identity (ANI) analysis revealed Staphylococcus saprophyticus subsp. saprophyticus ATCC 15,305 = NCTC 7292(GCA_006094355.1) as the closest type strain with an ANI of 99.52%, 87.49% assembly coverage, 93.95% type assembly coverage, confirming species-level identity and close relatedness. Screening with the Comprehensive Antibiotic Resistance Database (CARD) and the Virulence Factor Database (VFDB) revealed several genes conferring resistance to different classes of antibiotics: antibiotic tet (K)- Tetracyclines, norA, YkkCD, ANT (6)-I, str, and S12p- Aminoglycosides. And also, Virulence factors included: Agr- biofilm and toxins release, TcaR- Protein A, MprF- resist the host's innate immune system (specifically, antimicrobial peptides). Other genome characteristics are presented in Table 1 below. Table 1 Data availability, genome statistics and features of strain 3M Parameter Value Genes 2,885 CDSs 2,801 rRNAs 7, 6, 6 (5 S, 16 S, 23 S) tRNAs 61 ncRNAs 4.
DATA DESCRIPTION: The assembled genome size was 2,791,445 bp with a 33% GC, 13 Contigs, Contig N50 2,589,240, Contig L50 1 and 2,791,440x Genome coverage. Check M analysis revealed 68.25% completeness. Average Nucleotide Identity (ANI) analysis revealed Staphylococcus saprophyticus subsp. saprophyticus ATCC 15,305 = NCTC 7292(GCA_006094355.1) as the closest type strain with an ANI of 99.52%, 87.49% assembly coverage, 93.95% type assembly coverage, confirming species-level identity and close relatedness. Screening with the Comprehensive Antibiotic Resistance Database (CARD) and the Virulence Factor Database (VFDB) revealed several genes conferring resistance to different classes of antibiotics: antibiotic tet (K)- Tetracyclines, norA, YkkCD, ANT (6)-I, str, and S12p- Aminoglycosides. And also, Virulence factors included: Agr- biofilm and toxins release, TcaR- Protein A, MprF- resist the host's innate immune system (specifically, antimicrobial peptides). Other genome characteristics are presented in Table 1 below. Table 1 Data availability, genome statistics and features of strain 3M Parameter Value Genes 2,885 CDSs 2,801 rRNAs 7, 6, 6 (5 S, 16 S, 23 S) tRNAs 61 ncRNAs 4.