MedElevator Войти в исследования
← Поиск публикаций

DOI 10.1021/acs.jcim.5c01563

Медицинская библиотека · Journal of chemical information and modeling · 2025

Efficient Free Energies from a Simplified Electrostatic Embedding QM/MM Approach Based on Electrostatic Potential Fitted Operators.

Bonfrate Simone, Ferré Nicolas, Huix-Rotllant Miquel

СтатьяПеревод в очереди

Аннотация

Periodic boundary condition (PBC)-adapted formulations of quantum mechanics/molecular mechanics (QM/MM) methods allow for the accurate computation of free energies, provided there is sufficient phase-space sampling. In this work, we develop a robust and efficient QM/MM approach based on electrostatic potential fitted (ESPF) charge operators. The method combines smooth particle-mesh Ewald summation to describe QM-MM electrostatic interactions and the Ewald pair potential to treat long-range QM-QM interactions. It is fully compatible with both ab initio DFT and semiempirical DFTB QM/MM frameworks under PBC. We demonstrate the efficiency of the approach by implementing a thermodynamic integration (TI) scheme to compute solvation free energies and redox potentials in condensed-phase systems. For solvation energies, we introduce two separate coupling parameters to independently decouple electrostatic and van der Waals interactions. For redox potentials, a coupling parameter is introduced directly into the density matrix, interpolating between the N- and N ± 1-electron states via fractional occupations. We apply this framework to compute solvation free energies and redox potentials in water for a set of amino acid analogues and aromatic ketones, obtaining results in qualitative agreement with experimental data. This work paves the way for routine free energy calculations using electrostatic embedding QM/MM methodologies.

Для цитирования: Bonfrate Simone, Ferré Nicolas, Huix-Rotllant Miquel. Efficient Free Energies from a Simplified Electrostatic Embedding QM/MM Approach Based on Electrostatic Potential Fitted Operators.. Journal of chemical information and modeling. 2025. DOI: 10.1021/acs.jcim.5c01563.

Предметные рубрики MeSH

Подготовка и перевод публикации
Обработка статьи · этапы, ошибки и управление
Загрузка состояния…

История · было → стало

Состояние обновляется каждые 5 секунд, пока блок открыт. Процент показывается только там, где известен объём работы. Пауза останавливает продолжение этапа; текущий запрос к источнику может завершиться.

Тип публикации указан по данным источника. Уровень доказательности автоматически не присваивается.