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DOI 10.1007/s00894-025-06590-7

Медицинская библиотека · Journal of molecular modeling · 2025

Coumarin benzamide scaffold as potential 5-HT2C inhibitors: a multiparametric investigation and molecular simulation.

Gomes Akenaton Onassis Cardoso Viana, Lúcio Francisco Nithael Melo, da Rocha Matheus Nunes, de Oliveira Victor Moreira, Roberto Caio Henrique Alexandre, Marinho Márcia Machado, Dos Santos Hélcio Silva, de Lima-Neto Pedro, Marinho Emmanuel Silva

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Аннотация

CONTEXT: This study investigates the interaction of synthetic coumarin benzamides (CmB1-10) obtained from the literature with the 5-HT2CR serotonergic receptor and the carbonic anhydrase II (CA-II) enzyme, with potential pharmacological applications in anxiety disorders. CmB is a type of drug that has been shown to affect the 5-HT2CR receptor. This receptor is involved in mood, thinking, and muscle control. CmB has similar effects to other known antagonists. In addition, the dimethylated derivatives (3,4-CH3 and 3,5-CH3)-CmB2 and CmB4-were more effective as enzyme inhibitors, according to the literature. Structural analyses revealed that the CmB2 and CmB4 derivatives exhibit a higher nucleophilic character due to the electron-donating properties of the dimethyl substituents. The dimethylated derivatives exhibited ideal pharmacokinetic properties, including an apparent permeability (Papp, A→B 1.1 × 10⁻5 cm/s) and metabolic stability. The virtual screening revealed the structural specificity of the compounds for CA-II and 5-HT2CR, with affinity energy for 5-HT2CR - 10 kcal/mol. Molecular dynamics simulations estimated a low binding free energy (ΔG) of the lead compounds to about 5-HT2CR, indicating that they were energetically more stable complexes. This research provides a basis for future experimental studies that corroborate the neuromodulatory action of CmB derivatives.

METHODS

This study utilized the integration of molecular modeling techniques at quantum levels (DFT/B3LYP/6-311++G(d,p)) using the Gaussian 09 program to investigate structural/electronic properties and classical levels such as molecular docking and molecular dynamics, using the AutoDockVina™ and GROMACS® programs respectively, to investigate the interaction between meanings and biological targets (5-HT2CR and CA-II). DMPK was used to investigate the bioavailability and metabolism of the drugs from the results.

Для цитирования: Gomes Akenaton Onassis Cardoso Viana, Lúcio Francisco Nithael Melo, da Rocha Matheus Nunes, de Oliveira Victor Moreira, Roberto Caio Henrique Alexandre, Marinho Márcia Machado, Dos Santos Hélcio Silva, de Lima-Neto Pedro, Marinho Emmanuel Silva. Coumarin benzamide scaffold as potential 5-HT2C inhibitors: a multiparametric investigation and molecular simulation.. Journal of molecular modeling. 2025. DOI: 10.1007/s00894-025-06590-7.

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