Genome-wide identification and expression analysis of calmodulin and calmodulin-like (CaM and CML) gene family in Magallana gigas.

Ca2+ is a multifunctional second messenger that can regulate the activities of hormones and environmental signals related to biotic and abiotic stresses, playing a role in a wide range of cellular processes and influencing almost all aspects of life. In organisms, calmodulin (CaM) and calmodulin-like proteins (CML) can sense and decode the regulatory signals of Ca2+ through the EF-hand (a helix-loop-helix structure) domain. In this study, 7 CaM family members and 55 CML family members were identified in Magallana gigas. All MgCaM and MgCML genes distributed unevenly on 7 chromosomes, with 90% of the genes located on chromosomes 6 and 5. Furthermore, the expression of MgCaMs and MgCMLs was tissue-specific in M. gigas, and most of the genes expressed highly in gill, labial palp, adductor muscle and female gonad. Through the analysis of transcriptome data, it was found that the MgCaM and MgCML genes showed specific expression patterns in response to abiotic stress. When encountering heat-shock stress, different genes responded at different time points. In response to acidification stimulation, genes in the outer edge of mantle could respond to the stimulus obviously. The expression patterns of five representative genes were validated by RT-qPCR under acidification. This study systematically analyzed the characteristics of oyster CaM and CML gene families, revealing their crucial roles in the environmental adaptation mechanisms of M. gigas.