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DOI 10.1039/d6ra06166d

Медицинская библиотека · RSC advances · 2026

ChemGraph-XANES: an agentic framework for XANES simulation and curation.

Grizzi Vitor F, Pham Thang Duc, Pretzie Luke N, Xu Jiayi, Keceli Murat, Liu Cong

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Аннотация

Computational X-ray absorption near-edge structure (XANES) is widely used to interpret local coordination environments, oxidation states, and electronic structure, but large computational campaigns are often limited by workflow complexity. We present ChemGraph-XANES, a large language model (LLM)-based agentic framework that combines documentation-grounded parameter retrieval via retrieval-augmented generation (RAG), schema-constrained tool execution, deterministic FDMNES input generation, Parsl-backed execution, and provenance-aware data curation. Scripted and natural-language interfaces share a common scientific backend for structure handling, parameterization, execution, spectral extraction, and optional post-processing. We evaluate three workflow modes: documentation-grounded parameter propagation, structure-file-based execution, and composition-based execution from a chemistry-level request. Repeated trials yielded end-to-end completion in 10/10 composition-based runs, 10/10 structure-file-based runs, and 9/10 documentation-grounded RAG runs. In every RAG run, the energy-grid specification retrieved from the FDMNES manual was correctly propagated, with the single end-to-end failure occurring downstream during multi-structure handling. In a separate task-parallel demonstration, the framework retrieved 21 TiO2 structures from the Materials Project and submitted one FDMNES calculation per structure. All calculations completed successfully, with Parsl distributing the independent tasks across the user-configured worker pool. Together, these results show that ChemGraph-XANES provides a constrained and reproducible orchestration layer for computational spectroscopy, supporting consistent execution of representative tasks, documentation-linked parameter selection, and task-parallel generation of structure-linked XANES collections.

Для цитирования: Grizzi Vitor F, Pham Thang Duc, Pretzie Luke N, Xu Jiayi, Keceli Murat, Liu Cong. ChemGraph-XANES: an agentic framework for XANES simulation and curation.. RSC advances. 2026. DOI: 10.1039/d6ra06166d.
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