The Journal of chemical physics · 2026
Benchmarking of vibrational exciton models against quantum-chemical localized-mode calculations.
СтатьяНазвание и аннотация: Перевод в очереди
Обработка статьи · этапы, ошибки и управление
Загрузка состояния…
Ошибки и ограничения
История · было → стало
Состояние обновляется каждые 5 секунд, пока блок открыт. Процент показывается только там, где известен объём работы. Пауза останавливает продолжение этапа; текущий запрос к источнику может завершиться.
van Bodegraven Anna M, Focke Kevin, Wolter Mario, Jacob Christoph R
Аннотация
Vibrational exciton models are widely used for the simulation of biomolecular vibrational spectra, particularly two-dimensional infrared spectra. The parameters entering such models, specifically harmonic local-mode frequencies and harmonic coupling constants, are provided by vibrational maps, which have been parameterized against computational data for small molecules as well as experimental data. Here, we put forward a novel approach for assessing the quality of these harmonic vibrational maps against quantum-chemical reference data. For a test set consisting of molecular dynamics snapshots of polypeptides and small proteins, covering different secondary structure motifs, we performed full quantum-chemical calculations of harmonic vibrational frequencies and normal modes and applied a localization of normal modes to obtain localized-mode frequencies and coupling constants. These can be directly compared to those predicted by vibrational maps. We find that while there is a good correlation for the coupling constants and for local-mode frequencies of isolated polypeptides, there is hardly any correlation for the local-mode frequencies of solvated polypeptides. This striking finding calls into question the accuracy of the electrostatic maps that are used to model the effect of the solvent molecules on local-mode frequencies.