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Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026

Canonical Antibodies Adopt Distinct Binding Modes to Recognize Viral Glycan Shields.

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Cheng Jiaxuan, Cale Evan M, Maghsoudi Amirabbas, Sutton Matthew S, Longo Nancy S, Gillespie Rebecca A, Wang Lingshu, Kosik Ivan, Chong Sue, Yasuhara Atsuhiro, Bylund Tatsiana, Schön Arne, Tripathi Prabhanshu, Tsybovsky Yaroslav, Lei Haotian, Morano Nicholas C, Lupatkin Allison B, Morton Abraham J, Lang Zabrina C, Becker Jordan E, Frascilla Isabella R, Lee Myungjin, Li Ning, Liu Cuiping, Roark Ryan S, Shen Chen-Hsiang, Teng I-Ting, Van Wazer David J, Wang Danyi, Wu Lingyuan, Ahlsen Goran, Castro Mike, Du Haijuan, Ernandes Michael J, Li Tiansheng, Lin Bob C, Louder Mark K, McKee Krisha, Merriam Jonah S, O'Dell Sijy, Ou Li, Pletnev Sergei, Prikryl David, Qiu Qi, Rubin Sarah, Sastry Mallika, Schmidt Stephen D, Shajahan Asif, Shiakolas Andrea R, Srivatsan Sanjay, Zhang Baoshan, Zhou Qiong, Connors Mark, Gall Jason G, Guo Yicheng, Huang Rick K, Huang Yaoxing, Koup Richard A, Lei Q Paula, Mascola John R, Rawi Reda, Serebryannyy Leonid, Shapiro Lawrence, Sheng Zizhang, Ho David D, Wilson Patrick C, Yewdell Jonathan W, Pierson Theodore C, Kanekiyo Masaru, Doria-Rose Nicole A, Kwong Peter D, Zhou Tongqing

Аннотация

Viral entry glycoproteins are often shielded from immune recognition by dense N-linked glycans that limit antibody access to protein epitopes. While glycan-reactive antibodies with unusual architectures have been described, how canonical Y-shaped antibodies engage these glycan-rich surfaces remains poorly defined. Here, we characterize two human antibodies, VRC35 and VRC36, isolated from an HIV-1-infected donor, that recognize diverse glycosylated viral glycoproteins. Cryo-electron microscopy structural analyses of these antibodies in complex with viral entry glycoproteins, including HIV-1 envelope, influenza hemagglutinin, SARS-CoV-2 spike, and the Lassa virus glycoprotein complex, reveal adaptive Fab stoichiometries ranging from single-Fab binding to dimeric and higher-order assemblies are mediated by intra- and inter-IgG interactions that depend on local glycan organization. Dense glycan clustering on HIV-1 and influenza glycoproteins supports multivalent Fab assemblies and correlates with neutralization activity, whereas sparse glycan environments on SARS-CoV-2 and Lassa virus favor weak or heterogeneous engagement without neutralization. Structural and mutational analyses further demonstrate that homotypic Fab-Fab interactions stabilize multivalent engagement and contribute to neutralizing activity. Together, these findings define a structural framework in which viral glycan organization constrains antibody valency and engagement, while somatic hypermutation contributes to the acquisition of homotypic Fab-Fab interactions that facilitate multivalent recognition of viral glycan shields.