Functional & integrative genomics · 2025
Key copper homeostasis genes and inflammatory mechanisms in ischemic stroke: A bioinformatics and experimental study.
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Shi Ting, Wang Zhifeng, Yang Jiao, He Pengfen, Tian Daman, Lan Junfeng, Xu Shuangfeng, Yang Aiming, Xing Liwei, Xi Yujiang, Wang Jian
Аннотация
Ischemic stroke (IS) has high morbidity/mortality with limited treatments. This study screened core copper homeostasis-related genes in IS and validated their function as precise intervention targets. Human IS gene chip data were retrieved from GEO, and copper homeostasis genes from multiple databases. After data correction/normalization, IS differentially expressed genes (DEGs) were identified and intersected with copper genes. DAVID for GO/KEGG enrichment, STRING for PPI network, CytoHubba for key genes, and ROC curves for diagnostic value. MCAO rat models were established; after 14-day rearing, protein expression was validated via relevant assays. 1,425 IS DEGs and 2,610 copper genes intersected to 235 genes, enriched in inflammatory response, innate immunity, and TNF/NOD-like/Toll-like receptor pathways. Key genes HIF-1α, TNF, TLR4, IL-1β had IS diagnostic AUC 0.70-0.80. MCAO rats showed worse neurological deficits, larger infarcts, neuronal damage, brain copper accumulation, and upregulated key genes linked to neuroinflammation, BBB disruption, and neuronal injury. Bioinformatics and animal studies revealed copper homeostasis imbalance-related genes mediate inflammation, oxidative stress, and mitochondrial regulation, supporting the "copper accumulation-inflammation-oxidative stress" cascade. These genes may be novel IS targets. Further study on dynamic expression across ischemic time windows/brain regions and interactions with other cell death modes is needed.
Предметные рубрики MeSH
CopperHomeostasisInflammationIschemic StrokeComputational BiologyHumansAnimalsRatsOligonucleotide Array Sequence AnalysisOxidative StressDisease Models, AnimalMaleRats, Sprague-DawleyProtein Interaction MapsCytokinesNF-kappaB-Inducing KinaseToll-Like Receptor 4Hypoxia-Inducible Factor 1, alpha Subunit