Biomarkers associated with Hashimoto's thyroiditis induced by viral infection: An integrative bioinformatics and machine learning.

OBJECTIVE

Hashimoto's thyroiditis (HT) is a common disease characterized by autoimmune injury of the thyroid. Its pathogenesis entails complex interactions among hereditary predisposition, immune disorders and environmental factors. In recent years, viral infection has attracted much attention as a potential environmental trigger, but the role genes associated with HT remain unclear.

METHODS

In this study, COVID-19-related genes were combined with transcriptome data (GSE29315, GSE138198) of HT patients in the GEO database. Key genes were selected using machine learning (LASSO, SVM, and RF), GO/KEGG enrichment, and GSEA. Its function was confirmed by single-cell sequencing and ssGSEA immunoinfiltration analysis.

RESULTS

A total of 16 co-expressed genes of HT and viral infection were identified. KEGG and GO enrichment results showed that these genes were significantly enriched in inflammatory signaling, viral defense and immune cell activation pathways. After screening by machine learning algorithm, four key genes (IFITM3, IFI44L, CCL3, OAS1) were finally identified as the common diagnostic markers of HT and viral infection, and the ROC curve also showed good diagnostic performance. In addition, single cell sequencing further confirmed its high expression in thyroid tissue and immune infiltrating cells.

CONCLUSION

A virus-triggered autoimmune cascade involving IFITM3, IFI44L, CCL3, and OAS1 may precipitate HT. These four genes constitute robust, multi-omics biomarkers for early diagnosis and targeted therapy of HT following viral infection.