Standards in genomic sciences · 2009
Complete genome sequence of Saccharomonospora viridis type strain (P101).
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Pati Amrita, Sikorski Johannes, Nolan Matt, Lapidus Alla, Copeland Alex, Glavina Del Rio Tijana, Lucas Susan, Chen Feng, Tice Hope, Pitluck Sam, Cheng Jan-Fang, Chertkov Olga, Brettin Thomas, Han Cliff, Detter John C, Kuske Cheryl, Bruce David, Goodwin Lynne, Chain Patrick, D'haeseleer Patrik, Chen Amy, Palaniappan Krishna, Ivanova Natalia, Mavromatis Konstantinos, Mikhailova Natalia, Rohde Manfred, Tindall Brian J, Göker Markus, Bristow Jim, Eisen Jonathan A, Markowitz Victor, Hugenholtz Philip, Kyrpides Nikos C, Klenk Hans-Peter
Аннотация
Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it is a Gram-negative organism classified among the usually Gram-positive actinomycetes. Members of the species are frequently found in hot compost and hay, and its spores can cause farmer's lung disease, bagassosis, and humidifier fever. Strains of the species S. viridis have been found to metabolize the xenobiotic pentachlorophenol (PCP). The strain described in this study has been isolated from peat-bog in Ireland. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the family Pseudonocardiaceae, and the 4,308,349 bp long single replicon genome with its 3906 protein-coding and 64 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.