Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours.
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Hu Nan, Wang Zhaoming, Song Xin, Wei Lixuan, Kim Byung Sik, Freedman Neal D, Baek Jiwon, Burdette Laurie, Chang Jiang, Chung Charles, Dawsey Sanford M, Ding Ti, Gao Yu-Tang, Giffen Carol, Han Yaling, Hong Myunghee, Huang Jia, Kim Hee Sung, Koh Woon-Puay, Liao Linda M, Mao Yi Min, Qiao You-Lin, Shu Xiao-Ou, Tan Wen, Wang Chaoyu, Wu Chen, Wu Min-Jie, Xiang Yong-Bing, Yeager Meredith, Yook Jeong Hwan, Yuan Jian-Min, Zhang Peng, Zhao Xue-Ke, Zheng Wei, Song Kyuyoung, Wang Li-Dong, Lin Dongxin, Chanock Stephen J, Goldstein Alisa M, Taylor Philip R, Abnet Christian C
Аннотация
DESIGN: Here we present results for a GWAS using 2350 East Asian gastric cancer cases divided as 1189 gastric cardia and 1027 gastric non-cardia cases and 2708 controls. We also included up to 3042 cardia cases, 4359 non-cardia cases and 7548 controls for replication from two Chinese studies and one Korean study. From the GWAS, we selected 12 top SNPs for each gastric cancer subtype, 4 top SNPs for total gastric cancer and 1 SNP in MUC1 for replication testing.
RESULTS: We observed genome-wide significant associations for rs10074991 in PRKAA1 at 5p13.1 for cardia (p=7.36×10(-12)) and non-cardia cancers (p=2.42×10(-23)) with per allele OR (95% CI) for the combined endpoint of 0.80 (0.77 to 0.83). At 6p21.1, rs2294693 near UNC5CL was significantly associated with gastric non-cardia cancer risk (p=2.50×10(-8)), with OR (95% CI) of 1.18 (1.12 to 1.26), but there was only a nominal association for cardia cancer (p=1.47×10(-2)). We also confirmed a previously reported association for rs4072037 in MUC1 with p=6.59×10(-8) for total gastric cancer and similar estimates for cardia and non-cardia cancers. Three SNPs in PSCA previously reported to be associated with gastric non-cardia cancer showed no apparent association for cardia cancer.
CONCLUSIONS: Our results suggest that associations for SNPs with gastric cancer show some different results by tumour location in the stomach.