Computers in biology and medicine · 2022
Stepwise deep neural network (stepwise-net) for head and neck auto-segmentation on CT images.
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Kawahara Daisuke, Tsuneda Masato, Ozawa Shuichi, Okamoto Hiroyuki, Nakamura Mitsuhiro, Nishio Teiji, Saito Akito, Nagata Yasushi
Аннотация
OBJECTIVE: The current study aims to propose the auto-segmentation model on CT images of head and neck cancer using a stepwise deep neural network (stepwise-net).
MATERIAL AND METHODS: Six normal tissue structures in the head and neck region of 3D CT images: Brainstem, optic nerve, parotid glands (left and right), and submandibular glands (left and right) were segmented with deep learning. In addition to a conventional convolutional neural network (CNN) on U-net, a stepwise neural network (stepwise-network) was developed. The stepwise-network was based on 3D FCN. We designed two networks in the stepwise-network. One is identifying the target region for the segmentation with the low-resolution images. Then, the target region is cropped, which used for the input image for the prediction of the segmentation. These were compared with a clinical used atlas-based segmentation.
RESULTS: The DSCs of the stepwise-net was significantly higher than the atlas-based method for all organ at risk structures. Similarly, the JSCs of the stepwise-net was significantly higher than the atlas-based methods for all organ at risk structures. The Hausdorff distance (HD) was significantly smaller than the atlas-based method for all organ at-risk structures. For the comparison of the stepwise-net and U-net, the stepwise-net had a higher DSC and JSC and a smaller HD than the conventional U-net.
CONCLUSIONS: We found that the stepwise-network plays a role is superior to conventional U-net-based and atlas-based segmentation. Our proposed model that is a potentially valuable method for improving the efficiency of head and neck radiotherapy treatment planning.
MATERIAL AND METHODS: Six normal tissue structures in the head and neck region of 3D CT images: Brainstem, optic nerve, parotid glands (left and right), and submandibular glands (left and right) were segmented with deep learning. In addition to a conventional convolutional neural network (CNN) on U-net, a stepwise neural network (stepwise-network) was developed. The stepwise-network was based on 3D FCN. We designed two networks in the stepwise-network. One is identifying the target region for the segmentation with the low-resolution images. Then, the target region is cropped, which used for the input image for the prediction of the segmentation. These were compared with a clinical used atlas-based segmentation.
RESULTS: The DSCs of the stepwise-net was significantly higher than the atlas-based method for all organ at risk structures. Similarly, the JSCs of the stepwise-net was significantly higher than the atlas-based methods for all organ at risk structures. The Hausdorff distance (HD) was significantly smaller than the atlas-based method for all organ at-risk structures. For the comparison of the stepwise-net and U-net, the stepwise-net had a higher DSC and JSC and a smaller HD than the conventional U-net.
CONCLUSIONS: We found that the stepwise-network plays a role is superior to conventional U-net-based and atlas-based segmentation. Our proposed model that is a potentially valuable method for improving the efficiency of head and neck radiotherapy treatment planning.