Journal of chemical information and modeling · 2026
Refining AMOEBA Electrostatics for d-Glucose and 1→4-Linked d-Glucose Oligosaccharides.
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Newman Luke A, Ophof Riley, Vaissier Welborn Valerie
Аннотация
Carbohydrate simulations are highly sensitive to the treatment of hydroxyl electrostatics because hydration, conformational sampling, and reactivity are governed by dense hydrogen-bonding networks. Here, we examine how oxygen quadrupole scaling affects AMOEBA d-glucose models generated with Poltype2 by comparing the standard 0.7 scaling with full 1.0 scaling for α- and β-d-glucose monosaccharides, 1→4-linked oligomers, and concentrated solutions. Increasing the oxygen quadrupole scaling from 0.7 to 1.0 improves monosaccharide hydration free energies, increases d-glucose-water hydrogen-bond counts and lifetimes, and strengthens hydroxyl electric-field projections without substantially altering hydration-shell structure. In 1→4-linked d-glucose oligomers, full scaling also enhances intramolecular hydrogen bonding, restricts conformational sampling, and produces more organized chain electrostatics. Electric-field decompositions indicate that OH2 and OH3 in α1→4 d-glucose oligomers are strongly coupled to intramolecular hydrogen-bond networks, whereas OH6 remains more water-controlled and solvent-accessible. Diffusion simulations show that both models perform reasonably well at concentrations up to 0.5 mol/kg but overestimate the slowdown of d-glucose mobility at higher concentrations, especially with 1.0 scaling. Overall, full oxygen quadrupole scaling improves local hydration, hydroxyl electrostatics, and diffusion behavior in the lower-concentration regime. Further refinement is needed to balance these stronger interactions against transport properties in highly concentrated carbohydrate solutions, which may be particularly relevant to materials applications.