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Metagenomics reveals cryptic circulation of zoonotic viruses in Nigeria.

Zoonotic spillover events pose an ongoing threat to global health, with historic and recent viral diseases of international concern emerging from animal reservoirs 1-6. In Nigeria, limited surveillance of animal hosts at the human and animal interface continues to hinder our understanding of viruses that are cryptically circulating in animals near human dwellings with potential for consequential spillover events. We performed unbiased metagenomic next-generation sequencing (mNGS) on tissue and swab samples collected from 240 individual animals across 11 taxa (rodents, shrews, bats, goats, shee…

Postbiotics as promising tools for controlling foodborne viruses infections.

Foodborne viruses were ranked as the top food safety concerns in recent years and may pose a significant risk to the public's health. Any stage of the food supply chain can experience viral contamination of food, and the fecal-oral route of transmission to humans, which involves contact between individuals as well as ingestion of contaminated food or water may result in a foodborne outbreak. There are some chemical, physical and non-thermal technologies for inactivation of foodborne viruses but these methods can occasionally be ineffectual and alter the food's organoleptic properties. Postbiot…

Large DNA Viruses That Parasitoid Wasps Transmit to Hosts.

Many types of viruses have been identified in parasitoid wasps and other Hymenoptera. Parasitoid wasps also transmit several viruses to hosts through the piercing ovipositors that females use to lay eggs. Most viruses that are known to be transmitted by parasitoids have large double-stranded DNA genomes. We summarize the range of interactions that have evolved between parasitoid wasps and the viruses they transmit. Some viruses are mechanically transmitted to hosts, which can reduce the fitness of wasp offspring. Others have evolved into beneficial symbionts or reproductive parasites that repl…

Molecular architecture of giant viruses infecting microbial eukaryotes (protists).

In this review, I describe recent findings on the molecular architecture and genomic characterization of giant viruses that infect microbial eukaryotes (protists) across diverse ecosystems and ecological niches. Giant viruses are distinguished by their large and complex genomes, which encode a wide range of functions, including protein translation, carbohydrate and lipid metabolism, nitrogen cycling, light assimilation, and key metabolic pathways such as glycolysis and the tricarboxylic acid cycle. Additionally, these genomes feature unique genes, often acquired through horizontal gene transfe…

Wastewater-based epidemiology of influenza viruses: a systematic review.

INTRODUCTION: Wastewater-based epidemiology (WBE) has emerged as a valuable public health tool for monitoring the circulation of many pathogens, including influenza viruses (IVs). The general aim of this study is to systematically retrieve and summarize evidence on the use of WBE for supporting influenza surveillance. Specific objectives are: (i) to map influenza monitoring activities using WBE; (ii) to assess the performance of viral recovery methods; (iii) to explore association with clinical data; (iv) to evaluate the feasibility of typing/subtyping IVs directly from wastewater. METHODS: W…

Viral factors underlying the pandemic potential of influenza viruses.

SUMMARYOver the past 25 years, there has been an increasing number of mammalian (including human) infections caused by avian influenza A viruses that resulted in mild to severe illnesses. These viruses typically did not spread between mammals through aerosols in nature or in experimental settings. However, recently, this has changed, with several avian influenza A viruses exhibiting aerosol transmissibility among mammals, indicating that these viruses may pose a greater pandemic risk. In this review, we examine the current situation and discuss the mutations that may be necessary for avian inf…

Emergence of Antigenic Variants in Bovine H5N1 Influenza Viruses.

The recent emergence of the H5N1 influenza virus in dairy cattle has raised significant public health concerns. Using a previously established pseudovirus-based neutralization assay, we evaluated the impact of emerging hemagglutinin (HA) mutations on the efficacy of current candidate vaccine viruses (CVVs). Neutralization analysis revealed that the cow-derived H5N1 virus showed up to a 2.2-fold reduction in sensitivity compared to the CVV homologous neutralization titers. Among the 1,453 HA sequences analyzed from cow-derived H5N1 viruses, we identified four major mutations (E2K, D104G, V147M,…

Bioluminescent reporter influenza A viruses to track viral infections.

UNLABELLED: Influenza A viruses (IAV) infect a wide range of mammal and bird species and are responsible for seasonal outbreaks and occasional pandemics. Studying IAV requires methods to detect the presence of the virus in infected cells or animal models. Recombinant IAV expressing fluorescent proteins have allowed monitoring viral infection in cultured cells and ex vivo in the organs of infected animals. However, fluorescent-expressing IAV are often attenuated and are not suited for the imaging of infected animals using in vivo imaging systems (IVIS). To overcome this limitation, we generated…

Biosecurity and Vaccines for Emerging Aquatic Animal RNA Viruses.

Emerging RNA viruses pose a critical threat to aquatic animals, leading to significant ecological and economic consequences. Their high mutation rates and genetic adaptability drive rapid evolution, cross-species transmission, and expanding host ranges, complicating disease management. In aquaculture, RNA viruses are responsible for major outbreaks in fish, while DNA viruses predominate in crustaceans. Marine mammals are increasingly affected by morbilliviruses and highly pathogenic avian influenza (HPAI) H5N1, which has caused widespread mortality events in pinniped and cetacean populations, …

Direct Detection of Viruses Using Antibody-Modified Gold Nanorods.

Seasonal and sporadic viral infections put enormous burdens on global health and society. Although polymerase chain reaction (PCR) and other molecular approaches can be used to detect and identify viruses, they require substantial sample processing time and often have limited portability, limiting their utility in point-of-care settings. In the current study, we investigate the accuracy of direct sensing of two bacteriophages using chemically modified gold nanorods (AuNRs). We demonstrate that when using functionalized polyethylene glycol (PEG), the surface of AuNRs can be modified with desire…

Diverse bat organoids provide pathophysiological models for zoonotic viruses.

Bats are important reservoirs of zoonotic pathogens, but suitable model systems for comprehensively exploring host-pathogen interactions and assessing spillover risks remain limited. To address this gap, we developed a collection of bat organoid models spanning five species and four organ types. This multispecies, multiorgan organoid panel showed species- and tissue-specific replication patterns for several viruses, offering robust pathophysiological models for studying respiratory, renal, and enteric zoonotic viruses. Using this platform, we successfully isolated and characterized bat-borne m…

The airborne transmission of viruses causes tight transmission bottlenecks.

The transmission bottleneck describes the number of viral particles that initiate an infection in a new host. Previous studies have used genome sequence data to suggest that transmission bottlenecks for influenza and SARS-CoV-2 involve few viral particles, but the general principles of virus transmission are not fully understood. Here we show that, across a broad range of circumstances, tight transmission bottlenecks are a simple consequence of the physical process of airborne viral transmission. We use mathematical modelling to describe the physical process of the emission and inhalation of i

Abundant Intra-Subtype Reassortment Revealed in H13N8 Influenza Viruses.

Influenza A viruses (IAVs) pose a serious threat to global health. On the one hand, these viruses cause seasonal flu outbreaks in humans. On the other hand, they are a zoonotic infection that has the potential to cause a pandemic. The most important natural reservoir of IAVs are waterfowl. In this study, we investigated the occurrence of IAV in birds in the Republic of Buryatia (region in Russia). In 2020, a total of 3018 fecal samples were collected from wild migratory birds near Lake Baikal. Of these samples, 11 were found to be positive for the H13N8 subtype and whole-genome sequencing was …

Potential pandemic risk of circulating swine H1N2 influenza viruses.

Influenza A viruses in swine have considerable genetic diversity and continue to pose a pandemic threat to humans due to a potential lack of population level immunity. Here we describe a pipeline to characterize and triage influenza viruses for their pandemic risk and examine the pandemic potential of two widespread swine origin viruses. Our analysis reveals that a panel of human sera collected from healthy adults in 2020 has no cross-reactive neutralizing antibodies against a α-H1 clade strain (α-swH1N2) but do against a γ-H1 clade strain. The α-swH1N2 virus replicates efficiently in human ai…

Respiratory viruses: Preventive and therapeutic approaches to diverse pathogens.

Viral respiratory diseases affect millions of individuals worldwide each year. Annual vaccinations are recommended by the World Health Organization for some of them, such as influenza and more recently for the coronavirus disease of 2019 (COVID-19) and respiratory syncytial virus, with the goal of reducing disease severity and limiting transmission. In the context of infection and vaccination, it is of primary importance to evaluate the immune response to pathogens to shed light on the mechanisms of protection.

Combating Emerging Respiratory Viruses: Lessons and Future Antiviral Strategies.

Emerging viral diseases, including seasonal illnesses and pandemics, pose significant global public health risks. Respiratory viruses, particularly coronaviruses and influenza viruses, are associated with high morbidity and mortality, imposing substantial socioeconomic burdens. This review focuses on the current landscape of respiratory viruses, particularly influenza and SARS-CoV-2, and their antiviral treatments. It also discusses the potential for pandemics and the development of new antiviral vaccines and therapies, drawing lessons from past outbreaks to inform future strategies for managi…

Transovarial transmission of mosquito-borne viruses: a systematic review.

BACKGROUND: A number of mosquito-borne viruses (MBVs), such as dengue virus (DENV), zika virus (ZIKV), chikungunya (CHIKV), West Nile virus (WNV), and yellow fever virus (YFV) exert adverse health impacts on the global population. Aedes aegypti and Aedes albopictus are the prime vectors responsible for the transmission of these viruses. The viruses have acquired a number of routes for successful transmission, including horizontal and vertical transmission. Transovarial transmission is a subset/type of vertical transmission adopted by mosquitoes for the transmission of viruses from females to t…

Контроль за инфекциями RVFV с использованием вирусов биолюминесцентного репортера в Виво.

Вирус лихорадки Рифт-Вэлли способен заразить несколько органов и типов клеток, а курс инфекции варьируется между вирусными штаммами и между отдельными лицами, в частности, в зависимости от возраста, генетического фона и физиологического состояния. Исследования вирусных и приемных факторов включают обнаружение и количественную оценку вирусной нагрузки в различных точках времени и в различных тканях. В то время как это классически выполняется путем количественного определения генома или вирусной титрации, методы визуализации в vivo с использованием рекомбинантных вирусов, выражающих биолюминесце

Совпадение в аннотации оригинала
Rift Valley fever virus is able to infect multiple organs and cell types, and the course of infection varies between viral strains and betwe … performed by genome quantification or viral titration, in vivo imaging techniques using recombinant viruses expressing a bioluminescent or fluorescent protein allow noninvasive longitudinal studies on the same group of mice over the entire course of disease and the detection of unsuspected sites of infection. Here, we describe the protocol to monitor and …

Farmed fur animals harbour viruses with zoonotic spillover potential.

Animals such as raccoon dogs, mink and muskrats are farmed for fur and are sometimes used as food or medicinal products1,2, yet they are also potential reservoirs of emerging pathogens3. Here we performed single-sample metatranscriptomic sequencing of internal tissues from 461 individual fur animals that were found dead due to disease. We characterized 125 virus species, including 36 that were novel and 39 at potentially high risk of cross-species transmission, including zoonotic spillover. Notably, we identified seven species of coronaviruses, expanding their known host range, and documented …