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Rhinology · 2014

Use of peak nasal inspiratory flowmetry and nasal decongestant to evaluate outcome of septoplasty with radiofrequency coblation of the inferior turbinate.

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Augustine Marcellus, Nene Nuno Rocha, Fu Hongchang, Pinder Christopher L, Ligammari Lorena, Simpson Alexander P, Sanz-Fernández Irene, Thakkar Krupa, Qian Danwen, Fitzsimons Evelyn, Simpson Benjamin S, Vendramin Roberto, Castro Andrea, Niederer Heather, Turajlic Samra, Quezada Sergio A, McGranahan Nicholas, Watkins Chris, Swanton Charles, Litchfield Kevin

Аннотация

Immunotherapy has revolutionized cancer treatment, yet only a minority of individuals respond clinically, necessitating alternative strategies that can benefit these patients. Novel immuno-oncology targets may achieve this through bypassing resistance mechanisms to standard therapies. We introduce Mining Immunotherapy Drug tArgetS (MIDAS), a multimodal graph neural network system for immuno-oncology target discovery. MIDAS leverages gene interactions, multi-omic patient profiles, immune cell biology, antigen processing, disease associations and phenotypic consequences of genetic perturbations. It generalizes to time-sliced data, outcompetes state-of-the-art baselines (including OpenTargets) and ranks approved targets above those in clinical development. Moreover, MIDAS recovers immunotherapy-response-associated genes in unseen patients, thereby capturing immunotherapy response determinants. Interpretability analyses reveal a reliance on autoimmunity, regulatory networks and immuno-oncology pathways. Functionally perturbing oncostatin M-oncostatin M receptor signalling, a proposed MIDAS target, in TRACERx melanoma-patient-derived explants yielded reduced dysfunctional CD8+ T cells, which associate with immunotherapy response, and reduced CCL4 levels. Furthermore, oncostatin M and oncostatin M receptor expression is associated with altered T cell and macrophage profiles in bulk transcriptomic data from patient samples. These data are consistent with a role for oncostatin M-oncostatin M in modulating the tumour microenvironment towards immunosuppressive, tumour-promoting phenotypes. Our results present a machine learning framework for analysing multimodal data for immuno-oncology target discovery.

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